Packages

c

io.projectglow.common

SimpleInterval

case class SimpleInterval(contig: String, start: Int, end: Int) extends Locatable with Serializable with Product

Minimal immutable class representing a 1-based closed ended genomic interval Simplified version of org.broadinstitute.hellbender.utils.SimpleInterval

Linear Supertypes
Product, Equals, Serializable, Serializable, Locatable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. SimpleInterval
  2. Product
  3. Equals
  4. Serializable
  5. Serializable
  6. Locatable
  7. AnyRef
  8. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new SimpleInterval(contig: String, start: Int, end: Int)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  6. def contains(arg0: Locatable): Boolean
    Definition Classes
    Locatable
  7. val contig: String
  8. def contigsMatch(arg0: Locatable): Boolean
    Definition Classes
    Locatable
  9. val end: Int
  10. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  11. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  12. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  13. def getContig(): String
    Definition Classes
    SimpleInterval → Locatable
  14. def getEnd(): Int
    Definition Classes
    SimpleInterval → Locatable
  15. def getLengthOnReference(): Int
    Definition Classes
    Locatable
  16. def getStart(): Int
    Definition Classes
    SimpleInterval → Locatable
  17. def intersect(that: SimpleInterval): SimpleInterval
  18. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  19. def isValid: Boolean
  20. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  21. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  22. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  23. def overlaps(that: SimpleInterval): Boolean
  24. def overlaps(arg0: Locatable): Boolean
    Definition Classes
    Locatable
  25. def spanWith(that: SimpleInterval): SimpleInterval
  26. val start: Int
  27. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  28. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  29. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  30. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  31. def withinDistanceOf(arg0: Locatable, arg1: Int): Boolean
    Definition Classes
    Locatable

Inherited from Product

Inherited from Equals

Inherited from Serializable

Inherited from Serializable

Inherited from Locatable

Inherited from AnyRef

Inherited from Any

Ungrouped