A C D E F G H I M N O P R S T U W X Z

A

ABBREVIATION_PROPERTY - Static variable in class uno.informatics.data.pojo.EntityPojo

AbstractFeatureData - Class in uno.informatics.data.feature

AbstractFeatureData(String, List<? extends Feature>) - Constructor for class uno.informatics.data.feature.AbstractFeatureData

AbstractFeatureData(String, String, List<? extends Feature>) - Constructor for class uno.informatics.data.feature.AbstractFeatureData

AbstractFeatureData(String, Feature[]) - Constructor for class uno.informatics.data.feature.AbstractFeatureData

AbstractFeatureData(String, String, Feature[]) - Constructor for class uno.informatics.data.feature.AbstractFeatureData

AbstractMatrixData<ValueType> - Class in uno.informatics.data.matrix

AbstractMatrixData(String, Feature) - Constructor for class uno.informatics.data.matrix.AbstractMatrixData

AbstractMatrixData(String, String, Feature) - Constructor for class uno.informatics.data.matrix.AbstractMatrixData

addPropertyChangeListener(PropertyChangeListener) - Method in class uno.informatics.data.pojo.PropertyHandler

addValue(Object) - Method in class uno.informatics.data.pojo.ScalePojo

ArrayFeatureData - Class in uno.informatics.data.feature.array

ArrayFeatureData(String, Feature[], Object[][]) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureData

ArrayFeatureData(String, String, Feature[], Object[][]) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureData

ArrayFeatureData(String, List<? extends Feature>, SimpleEntity[], Object[][]) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureData

ArrayFeatureData(String, String, List<? extends Feature>, SimpleEntity[], Object[][]) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureData

ArrayFeatureData(String, List<? extends Feature>, List<List<Object>>) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureData

ArrayFeatureData(String, String, List<? extends Feature>, List<List<Object>>) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureData

ArrayFeatureData(String, List<? extends Feature>, List<SimpleEntity>, List<List<Object>>) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureData

ArrayFeatureData(String, String, List<? extends Feature>, List<SimpleEntity>, List<List<Object>>) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureData

ArrayFeatureDataRow - Class in uno.informatics.data.feature.array

ArrayFeatureDataRow(Object[]) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureDataRow

Creates a new ArrayFeatureDatasetRow using the given values.

ArrayFeatureDataRow(SimpleEntity, Object[]) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureDataRow

Creates a new ArrayFeatureDatasetRow using the given values.

ArrayFeatureDataRow(List<Object>) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureDataRow

Creates a new ArrayFeatureDatasetRow using the given values.

ArrayFeatureDataRow(SimpleEntity, List<Object>) - Constructor for class uno.informatics.data.feature.array.ArrayFeatureDataRow

Creates a new ArrayFeatureDatasetRow using the given values.

ArrayMatrixData<ValueType> - Class in uno.informatics.data.matrix.array

ArrayMatrixData(String, Feature, ValueType[][]) - Constructor for class uno.informatics.data.matrix.array.ArrayMatrixData

ArrayMatrixData(String, String, Feature, ValueType[][]) - Constructor for class uno.informatics.data.matrix.array.ArrayMatrixData

ArrayMatrixData(String, Feature, List<List<ValueType>>) - Constructor for class uno.informatics.data.matrix.array.ArrayMatrixData

ArrayMatrixData(String, String, Feature, List<List<ValueType>>) - Constructor for class uno.informatics.data.matrix.array.ArrayMatrixData

C

checkHeaders(SimpleEntity[]) - Static method in class uno.informatics.data.pojo.DataPojo

ColumnFeature - Interface in uno.informatics.data.feature

ColumnFeaturePojo - Class in uno.informatics.data.feature

ColumnFeaturePojo(String, DataType, ScaleType, int) - Constructor for class uno.informatics.data.feature.ColumnFeaturePojo

ColumnFeaturePojo(String, String, DataType, ScaleType, int) - Constructor for class uno.informatics.data.feature.ColumnFeaturePojo

ColumnFeaturePojo(String, String, String, DataType, ScaleType, int) - Constructor for class uno.informatics.data.feature.ColumnFeaturePojo

ColumnFeaturePojo(Feature) - Constructor for class uno.informatics.data.feature.ColumnFeaturePojo

ColumnFeaturePojo(String, int) - Constructor for class uno.informatics.data.feature.ColumnFeaturePojo

ColumnFeaturePojo(String, String, int) - Constructor for class uno.informatics.data.feature.ColumnFeaturePojo

ColumnFeaturePojo(String, String, String, int) - Constructor for class uno.informatics.data.feature.ColumnFeaturePojo

copyFeature(Feature) - Static method in class uno.informatics.data.utils.DatasetUtils

Copies a feature and its properties, validating at the same time.

createArray(int) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

createArray(int) - Method in class uno.informatics.data.matrix.array.DoubleArrayMatrixData

createArray(int) - Method in class uno.informatics.data.matrix.array.ObjectArrayMatrixData

createArrayArray(int) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

createArrayArray(int) - Method in class uno.informatics.data.matrix.array.DoubleArrayMatrixData

createArrayArray(int) - Method in class uno.informatics.data.matrix.array.ObjectArrayMatrixData

createDefaultColumnFeature(String, String, int) - Static method in class uno.informatics.data.utils.DatasetUtils

Creates a default column feature from a name and a bit mask of possible data types

createDefaultFeature(String, String, DataType, ScaleType) - Static method in class uno.informatics.data.utils.DatasetUtils

Creates a default feature from a name and a bit mask of possible data types

createFeature(ColumnFeature) - Static method in class uno.informatics.data.utils.DatasetUtils

Converts a column feature to simple feature

createFeatures(List<ColumnFeature>) - Static method in class uno.informatics.data.utils.DatasetUtils

Converts column features to simple features

createRow(boolean, List<Object>) - Static method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

Creates new ArrayFeatureDatasetRow

createRow(boolean, Object[]) - Static method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

Creates new ArrayFeatureDatasetRow

createRow(SimpleEntity, List<Object>) - Static method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

Creates new ArrayFeatureDatasetRow

createRow(SimpleEntity, Object[]) - Static method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

Creates new ArrayFeatureDatasetRow

createSubsetFeatureDataset(String, String, FeatureData, Set<Integer>) - Static method in class uno.informatics.data.feature.array.ArrayFeatureData

createSubsetFeatureDataset(String, String, FeatureData, int[]) - Static method in class uno.informatics.data.feature.array.ArrayFeatureData

createXStream() - Method in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

CSV_SUFFIX - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

D

DATA_DIRECTORY - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

DATA_VALUES_ENTRY_PREIFX - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

DataOption - Class in uno.informatics.data.utils

DataOption(String) - Constructor for class uno.informatics.data.utils.DataOption

DataOption(String, Object) - Constructor for class uno.informatics.data.utils.DataOption

DataPojo - Class in uno.informatics.data.pojo

DataPojo(String, SimpleEntity[]) - Constructor for class uno.informatics.data.pojo.DataPojo

DataPojo(String, String, SimpleEntity[]) - Constructor for class uno.informatics.data.pojo.DataPojo

DataPojo(Data) - Constructor for class uno.informatics.data.pojo.DataPojo

DATASET_PROPERTY - Static variable in class uno.informatics.data.pojo.DataPojo

DatasetPojo - Class in uno.informatics.data.pojo

DatasetPojo(String) - Constructor for class uno.informatics.data.pojo.DatasetPojo

DatasetPojo(String, String) - Constructor for class uno.informatics.data.pojo.DatasetPojo

DatasetPojo(String, String, String) - Constructor for class uno.informatics.data.pojo.DatasetPojo

DatasetPojo(Dataset) - Constructor for class uno.informatics.data.pojo.DatasetPojo

DatasetUtils - Class in uno.informatics.data.utils

DatasetUtils() - Constructor for class uno.informatics.data.utils.DatasetUtils

DESCRIPTION - Static variable in class uno.informatics.data.feature.AbstractFeatureData

DESCRIPTION_PROPERTY - Static variable in class uno.informatics.data.pojo.EntityPojo

DoubleArrayMatrixData - Class in uno.informatics.data.matrix.array

DoubleArrayMatrixData(String, Feature, Double[][]) - Constructor for class uno.informatics.data.matrix.array.DoubleArrayMatrixData

DoubleArrayMatrixData(String, Feature, List<List<Double>>) - Constructor for class uno.informatics.data.matrix.array.DoubleArrayMatrixData

DoubleArrayMatrixData(String, String, Feature, Double[][]) - Constructor for class uno.informatics.data.matrix.array.DoubleArrayMatrixData

DoubleArrayMatrixData(String, String, Feature, List<List<Double>>) - Constructor for class uno.informatics.data.matrix.array.DoubleArrayMatrixData

E

ELEMENT_FEATURE - Static variable in class uno.informatics.data.matrix.AbstractMatrixData

EntityPojo - Class in uno.informatics.data.pojo

EntityPojo(String) - Constructor for class uno.informatics.data.pojo.EntityPojo

EntityPojo(String, String) - Constructor for class uno.informatics.data.pojo.EntityPojo

EntityPojo(String, String, String) - Constructor for class uno.informatics.data.pojo.EntityPojo

EntityPojo(Entity) - Constructor for class uno.informatics.data.pojo.EntityPojo

equals(Object) - Method in class uno.informatics.data.pojo.SimpleEntityPojo

F

FeaturePojo - Class in uno.informatics.data.pojo

FeaturePojo(String) - Constructor for class uno.informatics.data.pojo.FeaturePojo

FeaturePojo(String, String) - Constructor for class uno.informatics.data.pojo.FeaturePojo

FeaturePojo(String, String, String) - Constructor for class uno.informatics.data.pojo.FeaturePojo

FeaturePojo(String, MethodPojo) - Constructor for class uno.informatics.data.pojo.FeaturePojo

FeaturePojo(String, String, MethodPojo) - Constructor for class uno.informatics.data.pojo.FeaturePojo

FeaturePojo(String, String, String, MethodPojo) - Constructor for class uno.informatics.data.pojo.FeaturePojo

FeaturePojo(Feature) - Constructor for class uno.informatics.data.pojo.FeaturePojo

FEATURES_ENTRY - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

FILE_TYPE_ENTRY - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

FileHandler - Class in uno.informatics.data.pojo

FileHandler(File) - Constructor for class uno.informatics.data.pojo.FileHandler

findValue(DataOption[], String, Class<T>) - Static method in class uno.informatics.data.utils.DataOption

findValue(DataOption[], String, Class<T>, T) - Static method in class uno.informatics.data.utils.DataOption

G

generateDatasetFeatures(Path, FileType, String, DataOption...) - Static method in class uno.informatics.data.feature.AbstractFeatureData

generateDatasetFeatures(Path, FileType, String, int, DataOption...) - Static method in class uno.informatics.data.feature.AbstractFeatureData

GermplasmPojo - Class in uno.informatics.data.pojo

GermplasmPojo(String) - Constructor for class uno.informatics.data.pojo.GermplasmPojo

GermplasmPojo(String, String) - Constructor for class uno.informatics.data.pojo.GermplasmPojo

GermplasmPojo(String, String, String) - Constructor for class uno.informatics.data.pojo.GermplasmPojo

GermplasmPojo(Germplasm) - Constructor for class uno.informatics.data.pojo.GermplasmPojo

getAbbreviation() - Method in class uno.informatics.data.pojo.EntityPojo

getColumnCount() - Method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

getColumnCount() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getColumnHeader(int) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getColumnHeaders() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getColumnHeadersAsArray() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getConversionType(Feature) - Static method in class uno.informatics.data.utils.DatasetUtils

getConversionType(Scale) - Static method in class uno.informatics.data.utils.DatasetUtils

getConversionTypes(DataType...) - Static method in class uno.informatics.data.utils.DatasetUtils

getConversionTypes(List<? extends Feature>) - Static method in class uno.informatics.data.utils.DatasetUtils

getConversionTypes(Feature, List<? extends Feature>) - Static method in class uno.informatics.data.utils.DatasetUtils

getDataset() - Method in class uno.informatics.data.feature.AbstractFeatureData

getDataset() - Method in class uno.informatics.data.matrix.AbstractMatrixData

getDataset() - Method in class uno.informatics.data.pojo.DataPojo

getDataType() - Method in class uno.informatics.data.feature.ColumnFeaturePojo

getDataType() - Method in interface uno.informatics.data.feature.SimpleFeature

getDataType() - Method in class uno.informatics.data.pojo.ScalePojo

getDataType() - Method in class uno.informatics.data.pojo.SimpleFeaturePojo

getDataTypes(int) - Static method in class uno.informatics.data.utils.DatasetUtils

getDescription() - Method in class uno.informatics.data.pojo.EntityPojo

getEndDate() - Method in class uno.informatics.data.pojo.StudyPojo

getFeatures() - Method in class uno.informatics.data.feature.AbstractFeatureData

getFeaturesAsArray() - Method in class uno.informatics.data.feature.AbstractFeatureData

getFile() - Method in class uno.informatics.data.pojo.FileHandler

getFileType() - Method in class uno.informatics.data.feature.array.ZipFeatureDataWriter

getHeader(int) - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getHeader() - Method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

getHeader(int) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getHeader(int) - Method in class uno.informatics.data.pojo.DataPojo

getIDs() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getIDs() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getIDs() - Method in class uno.informatics.data.pojo.DataPojo

getKey() - Method in class uno.informatics.data.utils.DataOption

getMaximumValue() - Method in class uno.informatics.data.pojo.ScalePojo

getMethod() - Method in class uno.informatics.data.feature.ColumnFeaturePojo

getMethod() - Method in class uno.informatics.data.pojo.FeaturePojo

getMethod() - Method in class uno.informatics.data.pojo.SimpleFeaturePojo

getMinimumValue() - Method in class uno.informatics.data.pojo.ScalePojo

getName() - Method in class uno.informatics.data.pojo.SimpleEntityPojo

getOntology() - Method in class uno.informatics.data.pojo.OntologyTermPojo

getPossibleDataTypes() - Method in interface uno.informatics.data.feature.ColumnFeature

getPossibleDataTypes() - Method in class uno.informatics.data.feature.ColumnFeaturePojo

getPropertyChangeSupport() - Method in class uno.informatics.data.pojo.PropertyHandler

getRow(int) - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getRowCount() - Method in class uno.informatics.data.feature.AbstractFeatureData

getRowCount() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getRowCount() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getRowHeader(int) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getRowHeaders() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getRowHeaders() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getRowHeadersAsArray() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getRowHeadersAsArray() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getRows() - Method in class uno.informatics.data.feature.AbstractFeatureData

getRows() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getRowsAsArray() - Method in class uno.informatics.data.feature.AbstractFeatureData

getRowsAsArray() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getScale() - Method in class uno.informatics.data.feature.ColumnFeaturePojo

getScale() - Method in class uno.informatics.data.pojo.MethodPojo

getScaleType() - Method in class uno.informatics.data.feature.ColumnFeaturePojo

getScaleType() - Method in interface uno.informatics.data.feature.SimpleFeature

getScaleType() - Method in class uno.informatics.data.pojo.ScalePojo

getScaleType() - Method in class uno.informatics.data.pojo.SimpleFeaturePojo

getScaleTypes(DataType) - Static method in class uno.informatics.data.utils.DatasetUtils

getSize() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getSize() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getSize() - Method in class uno.informatics.data.pojo.DataPojo

getSize() - Method in class uno.informatics.data.pojo.DatasetPojo

getSource() - Method in class uno.informatics.data.pojo.GermplasmPojo

getStartDate() - Method in class uno.informatics.data.pojo.StudyPojo

getStudy() - Method in class uno.informatics.data.pojo.DatasetPojo

getType() - Method in class uno.informatics.data.pojo.EntityPojo

getUniqueIdentifier() - Method in class uno.informatics.data.pojo.SimpleEntityPojo

getValue(int) - Method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

getValue(int, int) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getValue() - Method in class uno.informatics.data.utils.DataOption

getValueFeature() - Method in class uno.informatics.data.matrix.AbstractMatrixData

getValues() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getValues() - Method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

getValues() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

getValues() - Method in class uno.informatics.data.pojo.ScalePojo

getValuesAsArray() - Method in class uno.informatics.data.feature.array.ArrayFeatureData

getValuesAsArray() - Method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

getValuesAsArray() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

H

hasColumnHeaders() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

hashCode() - Method in class uno.informatics.data.pojo.SimpleEntityPojo

hasOption(DataOption[], String) - Static method in class uno.informatics.data.utils.DataOption

hasRowHeaders() - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

HEADER_PROPERTY - Static variable in class uno.informatics.data.feature.array.ArrayFeatureDataRow

I

ID - Static variable in class uno.informatics.data.feature.AbstractFeatureData

ID - Static variable in class uno.informatics.data.matrix.AbstractMatrixData

IDENTIFICATION_ENTRY - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

indexOf(String) - Method in class uno.informatics.data.pojo.DataPojo

Get the index of the entry with the given unique identifier.

indexOf(SimpleEntity) - Method in class uno.informatics.data.pojo.DataPojo

Get the index of the entry with the unique identifier contained in the given header.

indexOf(Object) - Method in class uno.informatics.data.pojo.ScalePojo

initialise() - Method in class uno.informatics.data.pojo.SimpleEntityPojo

M

MAX - Static variable in class uno.informatics.data.feature.AbstractFeatureData

META_DATA_DIRECTORY - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

METHOD_PROPERTY - Static variable in class uno.informatics.data.pojo.FeaturePojo

MethodPojo - Class in uno.informatics.data.pojo

MethodPojo(String, ScalePojo) - Constructor for class uno.informatics.data.pojo.MethodPojo

MethodPojo(String, String, ScalePojo) - Constructor for class uno.informatics.data.pojo.MethodPojo

MethodPojo(String, String, String, ScalePojo) - Constructor for class uno.informatics.data.pojo.MethodPojo

MethodPojo(Method) - Constructor for class uno.informatics.data.pojo.MethodPojo

MIN - Static variable in class uno.informatics.data.feature.AbstractFeatureData

N

NAME - Static variable in class uno.informatics.data.feature.AbstractFeatureData

NAME - Static variable in class uno.informatics.data.matrix.AbstractMatrixData

NAME_PROPERTY - Static variable in class uno.informatics.data.pojo.SimpleEntityPojo

O

ObjectArrayMatrixData - Class in uno.informatics.data.matrix.array

ObjectArrayMatrixData(String, Feature, Object[][]) - Constructor for class uno.informatics.data.matrix.array.ObjectArrayMatrixData

ObjectArrayMatrixData(String, Feature, List<List<Object>>) - Constructor for class uno.informatics.data.matrix.array.ObjectArrayMatrixData

ObjectArrayMatrixData(String, String, Feature, Object[][]) - Constructor for class uno.informatics.data.matrix.array.ObjectArrayMatrixData

ObjectArrayMatrixData(String, String, Feature, List<List<Object>>) - Constructor for class uno.informatics.data.matrix.array.ObjectArrayMatrixData

OntologyPojo - Class in uno.informatics.data.pojo

OntologyPojo(String) - Constructor for class uno.informatics.data.pojo.OntologyPojo

OntologyPojo(String, String) - Constructor for class uno.informatics.data.pojo.OntologyPojo

OntologyPojo(String, String, String) - Constructor for class uno.informatics.data.pojo.OntologyPojo

OntologyPojo(Ontology) - Constructor for class uno.informatics.data.pojo.OntologyPojo

OntologyTermPojo - Class in uno.informatics.data.pojo

OntologyTermPojo(String) - Constructor for class uno.informatics.data.pojo.OntologyTermPojo

OntologyTermPojo(String, String) - Constructor for class uno.informatics.data.pojo.OntologyTermPojo

OntologyTermPojo(String, String, String) - Constructor for class uno.informatics.data.pojo.OntologyTermPojo

OntologyTermPojo(OntologyTerm) - Constructor for class uno.informatics.data.pojo.OntologyTermPojo

P

PropertyHandler - Class in uno.informatics.data.pojo

PropertyHandler() - Constructor for class uno.informatics.data.pojo.PropertyHandler

R

read() - Method in class uno.informatics.data.feature.array.ZipFeatureDataReader

readData(Path, FileType, DataOption...) - Static method in class uno.informatics.data.feature.array.ArrayFeatureData

readData(Path, FileType, DataOption...) - Static method in class uno.informatics.data.matrix.array.DoubleArrayMatrixData

readData(Path, FileType, DataOption...) - Static method in class uno.informatics.data.matrix.array.ObjectArrayMatrixData

removePropertyChangeListener(PropertyChangeListener) - Method in class uno.informatics.data.pojo.PropertyHandler

ROW_HEADER_ENTRY - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

S

SCALE_PROPERTY - Static variable in class uno.informatics.data.pojo.MethodPojo

ScalePojo - Class in uno.informatics.data.pojo

ScalePojo(String) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, String) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, DataType, ScaleType) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, DataType, ScaleType) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, String, DataType, ScaleType) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, DataType, ScaleType, Number, Number) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, DataType, ScaleType, Number, Number) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, String, DataType, ScaleType, Number, Number) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, DataType, ScaleType, List<? extends Object>) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, DataType, ScaleType, List<? extends Object>) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, String, DataType, ScaleType, List<? extends Object>) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, DataType, ScaleType, Object[]) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, DataType, ScaleType, Object[]) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, String, DataType, ScaleType, Object[]) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, DataType, ScaleType, Number, Number, List<Object>) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, DataType, ScaleType, Number, Number, List<Object>) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, String, DataType, ScaleType, Number, Number, List<Object>) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, DataType, ScaleType, Number, Number, Object[]) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, DataType, ScaleType, Number, Number, Object[]) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(String, String, String, DataType, ScaleType, Number, Number, Object[]) - Constructor for class uno.informatics.data.pojo.ScalePojo

ScalePojo(Scale) - Constructor for class uno.informatics.data.pojo.ScalePojo

setAbbreviation(String) - Method in class uno.informatics.data.pojo.EntityPojo

Sets the optional short abbreviation that can be used in place of the name.

setColumnHeaders(SimpleEntity[]) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

setColumnHeaders(List<SimpleEntity>) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

setDataset(Dataset) - Method in class uno.informatics.data.matrix.AbstractMatrixData

setDataset(Dataset) - Method in class uno.informatics.data.pojo.DataPojo

setDataType(DataType) - Method in class uno.informatics.data.feature.ColumnFeaturePojo

setDataType(DataType) - Method in class uno.informatics.data.pojo.ScalePojo

setDescription(String) - Method in class uno.informatics.data.pojo.EntityPojo

Sets the optional description of what the entity is or does.

setFeatures(List<? extends Feature>) - Method in class uno.informatics.data.feature.AbstractFeatureData

setFeatures(Feature[]) - Method in class uno.informatics.data.feature.AbstractFeatureData

setFile(File) - Method in class uno.informatics.data.pojo.FileHandler

setFileType(FileType) - Method in class uno.informatics.data.feature.array.ZipFeatureDataWriter

setHeader(SimpleEntity) - Method in class uno.informatics.data.feature.array.ArrayFeatureDataRow

setKey(String) - Method in class uno.informatics.data.utils.DataOption

setMaximumValue(Number) - Method in class uno.informatics.data.pojo.ScalePojo

setMethod(Method) - Method in class uno.informatics.data.pojo.FeaturePojo

Sets the method associated with this feature.

setMinimumValue(Number) - Method in class uno.informatics.data.pojo.ScalePojo

setName(String) - Method in class uno.informatics.data.pojo.SimpleEntityPojo

Sets a (usually more) human readable name of the entity being identified.

setOntology(Ontology) - Method in class uno.informatics.data.pojo.OntologyTermPojo

setPossibleDataTypes(int) - Method in interface uno.informatics.data.feature.ColumnFeature

setPossibleDataTypes(int) - Method in class uno.informatics.data.feature.ColumnFeaturePojo

setRowHeaders(SimpleEntity[]) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

setRowHeaders(List<SimpleEntity>) - Method in class uno.informatics.data.matrix.array.ArrayMatrixData

setScale(Scale) - Method in class uno.informatics.data.pojo.MethodPojo

setScaleType(ScaleType) - Method in class uno.informatics.data.feature.ColumnFeaturePojo

setScaleType(ScaleType) - Method in class uno.informatics.data.pojo.ScalePojo

setSize(int) - Method in class uno.informatics.data.pojo.DatasetPojo

Sets the size of this dataset

setStudy(Study) - Method in class uno.informatics.data.pojo.DatasetPojo

Sets the optional study to which this dataset belongs

setType(OntologyTerm) - Method in class uno.informatics.data.pojo.EntityPojo

Sets the optional type of the entity, which is a term with an ontology

setUniqueIdentifier(String) - Method in class uno.informatics.data.pojo.SimpleEntityPojo

Sets the unique identifier of the entity being identified.

setValue(Object) - Method in class uno.informatics.data.utils.DataOption

setValueFeature(Feature) - Method in class uno.informatics.data.matrix.AbstractMatrixData

setValues(List<? extends Object>) - Method in class uno.informatics.data.pojo.ScalePojo

setValues(Object[]) - Method in class uno.informatics.data.pojo.ScalePojo

SimpleEntityPojo - Class in uno.informatics.data.pojo

SimpleEntityPojo(String) - Constructor for class uno.informatics.data.pojo.SimpleEntityPojo

SimpleEntityPojo(String, String) - Constructor for class uno.informatics.data.pojo.SimpleEntityPojo

SimpleEntityPojo(SimpleEntity) - Constructor for class uno.informatics.data.pojo.SimpleEntityPojo

SimpleFeature - Interface in uno.informatics.data.feature

SimpleFeaturePojo - Class in uno.informatics.data.pojo

SimpleFeaturePojo(String, DataType, ScaleType) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SimpleFeaturePojo(String, String, DataType, ScaleType) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SimpleFeaturePojo(String, String, String, DataType, ScaleType) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SimpleFeaturePojo(String, DataType, ScaleType, Number, Number) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SimpleFeaturePojo(String, String, DataType, ScaleType, Number, Number) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SimpleFeaturePojo(String, String, String, DataType, ScaleType, Number, Number) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SimpleFeaturePojo(String, DataType, ScaleType, List<? extends Object>) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SimpleFeaturePojo(String, String, DataType, ScaleType, List<? extends Object>) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SimpleFeaturePojo(String, String, String, DataType, ScaleType, List<? extends Object>) - Constructor for class uno.informatics.data.pojo.SimpleFeaturePojo

SIZE_PROPERTY - Static variable in class uno.informatics.data.pojo.DatasetPojo

SOURCE_PROPERTY - Static variable in class uno.informatics.data.pojo.GermplasmPojo

SPREADSHEET_NAME - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

STUDY_PROPERTY - Static variable in class uno.informatics.data.pojo.DatasetPojo

StudyPojo - Class in uno.informatics.data.pojo

StudyPojo(String) - Constructor for class uno.informatics.data.pojo.StudyPojo

StudyPojo(String, String) - Constructor for class uno.informatics.data.pojo.StudyPojo

StudyPojo(Study) - Constructor for class uno.informatics.data.pojo.StudyPojo

T

toString() - Method in class uno.informatics.data.pojo.PropertyHandler

toString() - Method in class uno.informatics.data.pojo.SimpleEntityPojo

TXT_SUFFIX - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

TYPE - Static variable in class uno.informatics.data.feature.AbstractFeatureData

TYPE_PROPERTY - Static variable in class uno.informatics.data.pojo.EntityPojo

U

UNIQUE_IDENTIFIER_PROPERTY - Static variable in class uno.informatics.data.pojo.SimpleEntityPojo

uno.informatics.data.feature - package uno.informatics.data.feature

uno.informatics.data.feature.array - package uno.informatics.data.feature.array

uno.informatics.data.matrix - package uno.informatics.data.matrix

uno.informatics.data.matrix.array - package uno.informatics.data.matrix.array

uno.informatics.data.pojo - package uno.informatics.data.pojo

uno.informatics.data.utils - package uno.informatics.data.utils

updateOrCreateHeaders(SimpleEntity[], int) - Static method in class uno.informatics.data.pojo.DataPojo

updateOrCreateHeaders(SimpleEntity[], int, String, String) - Static method in class uno.informatics.data.pojo.DataPojo

W

write(Data) - Method in class uno.informatics.data.feature.array.ZipFeatureDataWriter

writeData(Path, FileType) - Method in class uno.informatics.data.feature.array.ArrayFeatureData

X

XLS_SUFFIX - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

XLSX_SUFFIX - Static variable in class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

Z

ZipFeatureDataFileHandler - Class in uno.informatics.data.feature.array

ZipFeatureDataFileHandler(File) - Constructor for class uno.informatics.data.feature.array.ZipFeatureDataFileHandler

ZipFeatureDataReader - Class in uno.informatics.data.feature.array

ZipFeatureDataReader(File) - Constructor for class uno.informatics.data.feature.array.ZipFeatureDataReader

ZipFeatureDataWriter - Class in uno.informatics.data.feature.array

ZipFeatureDataWriter(File) - Constructor for class uno.informatics.data.feature.array.ZipFeatureDataWriter

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